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hdf5, r-bioc-rhdf5lib — security advisory

Type: advisorySources: OSVAdvisory ID: UBUNTU-CVE-2026-19029

A heap-based buffer over-read in H5Z__filter_scaleoffset() in src/H5Zscaleoffset.c in HDF5 through 2.2.0 lets an attacker cause a denial of service (application crash) with a crafted HDF5 file. When the stored minimum bits equal the full precision of the datatype, the decoder copies d_nelmts * size bytes from the compressed chunk without checking that the chunk holds that many bytes. Both values come from attacker-controlled scale-offset filter parameters in the dataset's filter pipeline message.

Products
hdf5, r-bioc-rhdf5lib
Affected versions
1.10.0-patch1+docs-4, 1.10.0-patch1+docs-4ubuntu0.1~esm1, 1.10.0-patch1+docs-4ubuntu0.1~esm2, 1.10.10+repack-3.1ubuntu3, 1.10.10+repack-3.1ubuntu4, 1.10.10+repack-3ubuntu1, 1.10.4+repack-10, 1.10.4+repack-11, 1.10.4+repack-11ubuntu1, 1.10.4+repack-11ubuntu1+esm1, 1.10.6+repack-5, 1.10.7+repack-4ubuntu1, 1.10.7+repack-4ubuntu2, 1.10.8+repack1-1ubuntu1, 1.12.1+dfsg-3, 1.14.2+dfsg-2, 1.14.5+repack-3build1, 1.14.5+repack-4, 1.14.6+repack-2, 1.16.0+dfsg-1, 1.22.0+dfsg-1, 1.22.1+dfsg-1, 1.24.0+dfsg-1, 1.24.1+dfsg-1, 1.24.2+dfsg-1, 1.24.2+dfsg-1build1, 1.24.2+dfsg-1build2, 1.28.0+dfsg-2build1, 1.28.0+dfsg-3, 1.28.0+dfsg-4, 1.6.0+dfsg-1, 1.6.3+dfsg-1, 1.8.0+dfsg-1, 1.8.11-3ubuntu1, 1.8.11-5ubuntu1, 1.8.11-5ubuntu2, 1.8.11-5ubuntu6, 1.8.11-5ubuntu7, 1.8.11-5ubuntu7.1, 1.8.11-5ubuntu7.1+esm1, 1.8.11-5ubuntu7.1+esm2, 1.8.15-patch1+docs-4, 1.8.15-patch1+docs-5, 1.8.16+docs-1, 1.8.16+docs-2, 1.8.16+docs-3, 1.8.16+docs-3ubuntu1, 1.8.16+docs-4, 1.8.16+docs-4ubuntu1, 1.8.16+docs-4ubuntu1.1, 1.8.16+docs-4ubuntu1.1+esm1, 1.8.16+docs-4ubuntu1.1+esm2, 2.0.0+dfsg-1, 2.0.0+dfsg2-1, 2.2.0+repack-4, 2.2.0+repack-5
Fixed versions
Not specified
CVEs
CVE-2026-19029
Confirmed fixed CVEs
Not specified
Updated in this feed
31 Oct 2026, 02:55 UTC · Revision 1

Source evidence

UBUNTU-CVE-2026-19029

core-osv · Original source

Published 6 Oct 2026, 21:17 UTC

A heap-based buffer over-read in H5Z__filter_scaleoffset() in src/H5Zscaleoffset.c in HDF5 through 2.2.0 lets an attacker cause a denial of service (application crash) with a crafted HDF5 file. When the stored minimum bits equal the full precision of the datatype, the decoder copies d_nelmts * size bytes from the compressed chunk without checking that the chunk holds that many bytes. Both values come from attacker-controlled scale-offset filter parameters in the dataset's filter pipeline message.

osv:UBUNTU-CVE-2026-19029

hdf5

Fixed versions: Not specified

hdf5

Fixed versions: Not specified

hdf5

Fixed versions: Not specified

hdf5

Fixed versions: Not specified

r-bioc-rhdf5lib

Fixed versions: Not specified

hdf5

Fixed versions: Not specified

r-bioc-rhdf5lib

Fixed versions: Not specified

hdf5

Fixed versions: Not specified

r-bioc-rhdf5lib

Fixed versions: Not specified

hdf5

Fixed versions: Not specified

r-bioc-rhdf5lib

Fixed versions: Not specified

hdf5

Fixed versions: Not specified

r-bioc-rhdf5lib

Fixed versions: Not specified

Complete source record
{
  "id": "a9c3ba7ecf62f60af54154cfa1f2c2ed313c16097baa8eea2fe4004df6799b6c",
  "url": "https://osv.dev/vulnerability/UBUNTU-CVE-2026-19029",
  "method": "structured",
  "payload": {
    "kind": "advisory",
    "title": "UBUNTU-CVE-2026-19029",
    "summary": "A heap-based buffer over-read in H5Z__filter_scaleoffset() in src/H5Zscaleoffset.c in HDF5 through 2.2.0 lets an attacker cause a denial of service (application crash) with a crafted HDF5 file. When the stored minimum bits equal the full precision of the datatype, the decoder copies d_nelmts * size bytes from the compressed chunk without checking that the chunk holds that many bytes. Both values come from attacker-controlled scale-offset filter parameters in the dataset's filter pipeline message.",
    "evidence": "osv:UBUNTU-CVE-2026-19029",
    "products": [
      {
        "name": {
          "value": "hdf5",
          "evidence": "/affected/0/package/name"
        },
        "prerequisites": [],
        "fixed_versions": [],
        "affected_versions": [
          {
            "value": "1.8.11-3ubuntu1",
            "evidence": "/affected/0/versions"
          },
          {
            "value": "1.8.11-5ubuntu1",
            "evidence": "/affected/0/versions"
          },
          {
            "value": "1.8.11-5ubuntu2",
            "evidence": "/affected/0/versions"
          },
          {
            "value": "1.8.11-5ubuntu6",
            "evidence": "/affected/0/versions"
          },
          {
            "value": "1.8.11-5ubuntu7",
            "evidence": "/affected/0/versions"
          },
          {
            "value": "1.8.11-5ubuntu7.1",
            "evidence": "/affected/0/versions"
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          {
            "value": "1.8.11-5ubuntu7.1+esm1",
            "evidence": "/affected/0/versions"
          },
          {
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            "evidence": "/affected/0/versions"
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      {
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        "affected_versions": [
          {
            "value": "1.8.15-patch1+docs-4",
            "evidence": "/affected/1/versions"
          },
          {
            "value": "1.8.15-patch1+docs-5",
            "evidence": "/affected/1/versions"
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          {
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            "evidence": "/affected/1/versions"
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          {
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          {
            "value": "1.8.16+docs-3",
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          {
            "value": "1.8.16+docs-3ubuntu1",
            "evidence": "/affected/1/versions"
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          {
            "value": "1.8.16+docs-4",
            "evidence": "/affected/1/versions"
          },
          {
            "value": "1.8.16+docs-4ubuntu1",
            "evidence": "/affected/1/versions"
          },
          {
            "value": "1.8.16+docs-4ubuntu1.1",
            "evidence": "/affected/1/versions"
          },
          {
            "value": "1.8.16+docs-4ubuntu1.1+esm1",
            "evidence": "/affected/1/versions"
          },
          {
            "value": "1.8.16+docs-4ubuntu1.1+esm2",
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      },
      {
        "name": {
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          "evidence": "/affected/2/package/name"
        },
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        "affected_versions": [
          {
            "value": "1.10.0-patch1+docs-4",
            "evidence": "/affected/2/versions"
          },
          {
            "value": "1.10.0-patch1+docs-4ubuntu0.1~esm1",
            "evidence": "/affected/2/versions"
          },
          {
            "value": "1.10.0-patch1+docs-4ubuntu0.1~esm2",
            "evidence": "/affected/2/versions"
          }
        ]
      },
      {
        "name": {
          "value": "hdf5",
          "evidence": "/affected/3/package/name"
        },
        "prerequisites": [],
        "fixed_versions": [],
        "affected_versions": [
          {
            "value": "1.10.4+repack-10",
            "evidence": "/affected/3/versions"
          },
          {
            "value": "1.10.4+repack-11",
            "evidence": "/affected/3/versions"
          },
          {
            "value": "1.10.4+repack-11ubuntu1",
            "evidence": "/affected/3/versions"
          },
          {
            "value": "1.10.4+repack-11ubuntu1+esm1",
            "evidence": "/affected/3/versions"
          }
        ]
      },
      {
        "name": {
          "value": "r-bioc-rhdf5lib",
          "evidence": "/affected/4/package/name"
        },
        "prerequisites": [],
        "fixed_versions": [],
        "affected_versions": [
          {
            "value": "1.6.0+dfsg-1",
            "evidence": "/affected/4/versions"
          },
          {
            "value": "1.6.3+dfsg-1",
            "evidence": "/affected/4/versions"
          },
          {
            "value": "1.8.0+dfsg-1",
            "evidence": "/affected/4/versions"
          }
        ]
      },
      {
        "name": {
          "value": "hdf5",
          "evidence": "/affected/5/package/name"
        },
        "prerequisites": [],
        "fixed_versions": [],
        "affected_versions": [
          {
            "value": "1.10.6+repack-5",
            "evidence": "/affected/5/versions"
          },
          {
            "value": "1.10.7+repack-4ubuntu1",
            "evidence": "/affected/5/versions"
          },
          {
            "value": "1.10.7+repack-4ubuntu2",
            "evidence": "/affected/5/versions"
          }
        ]
      },
      {
        "name": {
          "value": "r-bioc-rhdf5lib",
          "evidence": "/affected/6/package/name"
        },
        "prerequisites": [],
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        "affected_versions": [
          {
            "value": "1.12.1+dfsg-3",
            "evidence": "/affected/6/versions"
          },
          {
            "value": "1.14.2+dfsg-2",
            "evidence": "/affected/6/versions"
          },
          {
            "value": "1.16.0+dfsg-1",
            "evidence": "/affected/6/versions"
          }
        ]
      },
      {
        "name": {
          "value": "hdf5",
          "evidence": "/affected/7/package/name"
        },
        "prerequisites": [],
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        "affected_versions": [
          {
            "value": "1.10.8+repack1-1ubuntu1",
            "evidence": "/affected/7/versions"
          },
          {
            "value": "1.10.10+repack-3ubuntu1",
            "evidence": "/affected/7/versions"
          },
          {
            "value": "1.10.10+repack-3.1ubuntu3",
            "evidence": "/affected/7/versions"
          },
          {
            "value": "1.10.10+repack-3.1ubuntu4",
            "evidence": "/affected/7/versions"
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      {
        "name": {
          "value": "r-bioc-rhdf5lib",
          "evidence": "/affected/8/package/name"
        },
        "prerequisites": [],
        "fixed_versions": [],
        "affected_versions": [
          {
            "value": "1.22.0+dfsg-1",
            "evidence": "/affected/8/versions"
          },
          {
            "value": "1.22.1+dfsg-1",
            "evidence": "/affected/8/versions"
          },
          {
            "value": "1.24.0+dfsg-1",
            "evidence": "/affected/8/versions"
          },
          {
            "value": "1.24.1+dfsg-1",
            "evidence": "/affected/8/versions"
          },
          {
            "value": "1.24.2+dfsg-1",
            "evidence": "/affected/8/versions"
          },
          {
            "value": "1.24.2+dfsg-1build1",
            "evidence": "/affected/8/versions"
          },
          {
            "value": "1.24.2+dfsg-1build2",
            "evidence": "/affected/8/versions"
          }
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      {
        "name": {
          "value": "hdf5",
          "evidence": "/affected/9/package/name"
        },
        "prerequisites": [],
        "fixed_versions": [],
        "affected_versions": [
          {
            "value": "1.14.6+repack-2",
            "evidence": "/affected/9/versions"
          },
          {
            "value": "2.2.0+repack-4",
            "evidence": "/affected/9/versions"
          },
          {
            "value": "2.2.0+repack-5",
            "evidence": "/affected/9/versions"
          }
        ]
      },
      {
        "name": {
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          "evidence": "/affected/10/package/name"
        },
        "prerequisites": [],
        "fixed_versions": [],
        "affected_versions": [
          {
            "value": "1.28.0+dfsg-3",
            "evidence": "/affected/10/versions"
          },
          {
            "value": "1.28.0+dfsg-4",
            "evidence": "/affected/10/versions"
          },
          {
            "value": "2.0.0+dfsg-1",
            "evidence": "/affected/10/versions"
          },
          {
            "value": "2.0.0+dfsg2-1",
            "evidence": "/affected/10/versions"
          }
        ]
      },
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        "name": {
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          "evidence": "/affected/11/package/name"
        },
        "prerequisites": [],
        "fixed_versions": [],
        "affected_versions": [
          {
            "value": "1.14.5+repack-3build1",
            "evidence": "/affected/11/versions"
          },
          {
            "value": "1.14.5+repack-4",
            "evidence": "/affected/11/versions"
          },
          {
            "value": "1.14.6+repack-2",
            "evidence": "/affected/11/versions"
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      {
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          },
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            "value": "1.28.0+dfsg-3",
            "evidence": "/affected/12/versions"
          }
        ]
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    ],
    "severity": "medium",
    "structured": {
      "id": "UBUNTU-CVE-2026-19029",
      "aliases": [
        "UBUNTU-CVE-2026-19029"
      ],
      "metrics": [
        {
          "type": "CVSS_V4",
          "score": "CVSS:4.0/AV:L/AC:L/AT:N/PR:N/UI:P/VC:N/VI:N/VA:H/SC:N/SI:N/SA:N"
        },
        {
          "type": "Ubuntu",
          "score": "medium"
        }
      ],
      "affected": [
        {
          "ranges": [
            {
              "type": "ECOSYSTEM",
              "events": [
                {
                  "introduced": "0"
                }
              ]
            }
          ],
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          ],
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          },
          "ecosystem_specific": {
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          },
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          ],
          "database_specific": {
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          },
          "ecosystem_specific": {
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          ],
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          },
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          ],
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          },
          "ecosystem_specific": {
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              {
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              {
                "binary_name": "libhdf5-mpich-100",
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              {
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        },
        {
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          ],
          "package": {
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            "ecosystem": "Ubuntu:Pro:20.04:LTS"
          },
          "versions": [
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            "1.10.4+repack-11ubuntu1",
            "1.10.4+repack-11ubuntu1+esm1"
          ],
          "database_specific": {
            "source": "https://github.com/canonical/ubuntu-security-notices/blob/main/osv/cve/2026/UBUNTU-CVE-2026-19029.json"
          },
          "ecosystem_specific": {
            "binaries": [
              {
                "binary_name": "hdf5-helpers",
                "binary_version": "1.10.4+repack-11ubuntu1+esm1"
              },
              {
                "binary_name": "hdf5-tools",
                "binary_version": "1.10.4+repack-11ubuntu1+esm1"
              },
              {
                "binary_name": "libhdf5-103",
                "binary_version": "1.10.4+repack-11ubuntu1+esm1"
              },
              {
                "binary_name": "libhdf5-cpp-103",
                "binary_version": "1.10.4+repack-11ubuntu1+esm1"
              },
              {
                "binary_name": "libhdf5-java",
                "binary_version": "1.10.4+repack-11ubuntu1+esm1"
              },
              {
                "binary_name": "libhdf5-jni",
                "binary_version": "1.10.4+repack-11ubuntu1+esm1"
              },
              {
                "binary_name": "libhdf5-mpich-103",
                "binary_version": "1.10.4+repack-11ubuntu1+esm1"
              },
              {
                "binary_name": "libhdf5-openmpi-103",
                "binary_version": "1.10.4+repack-11ubuntu1+esm1"
              }
            ]
          }
        },
        {
          "ranges": [
            {
              "type": "ECOSYSTEM",
              "events": [
                {
                  "introduced": "0"
                }
              ]
            }
          ],
          "package": {
            "name": "r-bioc-rhdf5lib",
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      "modified": "2026-10-17T12:59:54.002600527Z",
      "provider": "osv",
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      "references": [
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        "https://www.cve.org/CVERecord?id=CVE-2026-19029",
        "https://github.com/HDFGroup/hdf5/pull/6718"
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  "source_id": "core-osv",
  "document_id": 359899,
  "published_at": "2026-10-06T21:17:00+00:00"
}