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openbabel — security advisory

Type: advisorySources: OSVAdvisory ID: UBUNTU-CVE-2026-3408

A vulnerability was identified in Open Babel up to 3.1.1. This impacts the function OBAtom::GetExplicitValence of the file isrc/atom.cpp of the component CDXML File Handler. Such manipulation leads to null pointer dereference. The attack can be launched remotely. The exploit is publicly available and might be used. The name of the patch is e23a224b8fd9d7c2a7cde9ef4ec6afb4c05aa08a. It is best practice to apply a patch to resolve this issue.

Products
openbabel
Affected versions
2.3.2+dfsg-2.2, 2.3.2+dfsg-2.2build1, 2.3.2+dfsg-3build1, 2.4.1+dfsg-3, 2.4.1+dfsg-3build1, 2.4.1+dfsg-5.1, 2.4.1+dfsg-6, 3.0.0+dfsg-3, 3.0.0+dfsg-3ubuntu3, 3.1.1+dfsg-11ubuntu3, 3.1.1+dfsg-11ubuntu4, 3.1.1+dfsg-11ubuntu5, 3.1.1+dfsg-14ubuntu2, 3.1.1+dfsg-6ubuntu1, 3.1.1+dfsg-6ubuntu5, 3.1.1+dfsg-9build2, 3.1.1+dfsg-9ubuntu1, 3.1.1+dfsg-9ubuntu2, 3.1.1+dfsg-9ubuntu4, 3.1.1+dfsg-9ubuntu5
Fixed versions
Not specified
CVEs
CVE-2026-3408
Confirmed fixed CVEs
Not specified
Updated in this feed
31 Oct 2026, 02:08 UTC · Revision 1

Source evidence

UBUNTU-CVE-2026-3408

core-osv · Original source

Published 2 Mar 2026, 04:16 UTC

A vulnerability was identified in Open Babel up to 3.1.1. This impacts the function OBAtom::GetExplicitValence of the file isrc/atom.cpp of the component CDXML File Handler. Such manipulation leads to null pointer dereference. The attack can be launched remotely. The exploit is publicly available and might be used. The name of the patch is e23a224b8fd9d7c2a7cde9ef4ec6afb4c05aa08a. It is best practice to apply a patch to resolve this issue.

osv:UBUNTU-CVE-2026-3408

openbabel

Fixed versions: Not specified

openbabel

Fixed versions: Not specified

openbabel

Fixed versions: Not specified

openbabel

Fixed versions: Not specified

openbabel

Fixed versions: Not specified

openbabel

Fixed versions: Not specified

openbabel

Fixed versions: Not specified

openbabel

Fixed versions: Not specified

Complete source record
{
  "id": "688623c8c560219daf78cdedd1f7af0371cd6595bc123a55d1ea4e582b5a395d",
  "url": "https://osv.dev/vulnerability/UBUNTU-CVE-2026-3408",
  "method": "structured",
  "payload": {
    "kind": "advisory",
    "title": "UBUNTU-CVE-2026-3408",
    "summary": "A vulnerability was identified in Open Babel up to 3.1.1. This impacts the function OBAtom::GetExplicitValence of the file isrc/atom.cpp of the component CDXML File Handler. Such manipulation leads to null pointer dereference. The attack can be launched remotely. The exploit is publicly available and might be used. The name of the patch is e23a224b8fd9d7c2a7cde9ef4ec6afb4c05aa08a. It is best practice to apply a patch to resolve this issue.",
    "evidence": "osv:UBUNTU-CVE-2026-3408",
    "products": [
      {
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          "evidence": "/affected/0/package/name"
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            "evidence": "/affected/0/versions"
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          {
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      {
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        "affected_versions": [
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            "value": "3.1.1+dfsg-11ubuntu3",
            "evidence": "/affected/5/versions"
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          {
            "value": "3.1.1+dfsg-11ubuntu4",
            "evidence": "/affected/5/versions"
          }
        ]
      },
      {
        "name": {
          "value": "openbabel",
          "evidence": "/affected/6/package/name"
        },
        "prerequisites": [],
        "fixed_versions": [],
        "affected_versions": [
          {
            "value": "3.1.1+dfsg-11ubuntu5",
            "evidence": "/affected/6/versions"
          },
          {
            "value": "3.1.1+dfsg-14ubuntu2",
            "evidence": "/affected/6/versions"
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        ]
      },
      {
        "name": {
          "value": "openbabel",
          "evidence": "/affected/7/package/name"
        },
        "prerequisites": [],
        "fixed_versions": [],
        "affected_versions": [
          {
            "value": "3.1.1+dfsg-11ubuntu4",
            "evidence": "/affected/7/versions"
          },
          {
            "value": "3.1.1+dfsg-11ubuntu5",
            "evidence": "/affected/7/versions"
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        ]
      }
    ],
    "severity": "medium",
    "structured": {
      "id": "UBUNTU-CVE-2026-3408",
      "aliases": [
        "UBUNTU-CVE-2026-3408"
      ],
      "metrics": [
        {
          "type": "CVSS_V3",
          "score": "CVSS:3.1/AV:N/AC:L/PR:N/UI:R/S:U/C:N/I:N/A:L"
        },
        {
          "type": "CVSS_V3",
          "score": "CVSS:3.1/AV:N/AC:L/PR:N/UI:R/S:U/C:N/I:N/A:H"
        },
        {
          "type": "CVSS_V4",
          "score": "CVSS:4.0/AV:N/AC:L/AT:N/PR:N/UI:P/VC:N/VI:N/VA:L/SC:N/SI:N/SA:N/E:P"
        },
        {
          "type": "Ubuntu",
          "score": "medium"
        }
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              "events": [
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            "ecosystem": "Ubuntu:16.04:LTS"
          },
          "versions": [
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            "2.3.2+dfsg-2.2build1"
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          "database_specific": {
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          },
          "ecosystem_specific": {
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              {
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            "ecosystem": "Ubuntu:18.04:LTS"
          },
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          ],
          "database_specific": {
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          },
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        }
      ],
      "modified": "2026-10-17T12:58:11.954112906Z",
      "provider": "osv",
      "upstream": [
        "CVE-2026-3408"
      ],
      "references": [
        "https://ubuntu.com/security/CVE-2026-3408",
        "https://www.cve.org/CVERecord?id=CVE-2026-3408",
        "https://github.com/openbabel/openbabel/issues/2848",
        "https://github.com/openbabel/openbabel/pull/2862",
        "https://github.com/VedantMadane/openbabel/commit/e23a224b8fd9d7c2a7cde9ef4ec6afb4c05aa08a",
        "https://github.com/oneafter/0128/blob/main/ob3/repro.cdxml",
        "https://vuldb.com/?ctiid.348303",
        "https://vuldb.com/?id.348303",
        "https://vuldb.com/?submit.763756"
      ]
    },
    "related_cves": [
      {
        "value": "CVE-2026-3408",
        "evidence": "/upstream"
      }
    ],
    "security_relevant": true,
    "severity_evidence": "/severity/1/score"
  },
  "source_id": "core-osv",
  "document_id": 358326,
  "published_at": "2026-03-02T04:16:00+00:00"
}